IL_8FON_222

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

8FON|1|XA|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_222 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.3445

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

8FON|1|XA|C|1128
8FON|1|XA|C|1129
8FON|1|XA|A|1130
8FON|1|XA|G|1131
8FON|1|XA|C|1132
*
8FON|1|XA|G|1142
8FON|1|XA|G|1143

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9