IL_8FON_234

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

8FON|1|XA|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_234 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.2257

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

8FON|1|XA|C|1440
8FON|1|XA|G|1441
8FON|1|XA|G|1442
8FON|1|XA|G|1443
8FON|1|XA|A|1446
8FON|1|XA|G|1447
*
8FON|1|XA|C|1459
8FON|1|XA|A|1460
8FON|1|XA|G|1461

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YT

50S ribosomal protein L19