IL_8FON_286

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

8FON|1|YA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_286 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1148

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8FON|1|YA|C|1351
8FON|1|YA|U|1352
8FON|1|YA|A|1353
8FON|1|YA|A|1354
8FON|1|YA|G|1355
*
8FON|1|YA|C|1376
8FON|1|YA|G|1377
8FON|1|YA|A|1378
8FON|1|YA|A|1379
8FON|1|YA|G|1380

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YD

50S ribosomal protein L2