IL_8FON_309

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_309 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1084

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8FON|1|YA|G|1856
8FON|1|YA|G|1857
8FON|1|YA|G|1858
8FON|1|YA|A|1859
8FON|1|YA|G|1860
*
8FON|1|YA|C|1882
8FON|1|YA|G|1883
8FON|1|YA|A|1884
8FON|1|YA|A|1885
8FON|1|YA|C|1886

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28