IL_8FON_355

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_355 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8FON|1|RA|G|1666
8FON|1|RA|G|1667
8FON|1|RA|A|1668
8FON|1|RA|A|1669
8FON|1|RA|C|1670
8FON|1|RA|U|1671
8FON|1|RA|C|1672
8FON|1|RA|U|1673
8FON|1|RA|G|1674
*
8FON|1|RA|C|1990
8FON|1|RA|U|1991
8FON|1|RA|G|1992
8FON|1|RA|U|1993
8FON|1|RA|C|1994

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14