IL_8FR8_020

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8FR8|1|A|G|916, 8FR8|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_020 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1142

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8FR8|1|A|G|789
8FR8|1|A|A|790
8FR8|1|A|A|791
8FR8|1|A|G|792
8FR8|1|A|C|793
*
8FR8|1|A|G|914
8FR8|1|A|U|915
8FR8|1|A|G|916
8FR8|1|A|A|917
8FR8|1|A|U|918
8FR8|1|A|A|919
8FR8|1|A|G|920
8FR8|1|A|C|921

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain M

50S ribosomal protein L4

Chain V

50S ribosomal protein L15