IL_8FR8_023

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_023 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.0978

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8FR8|1|A|U|818
8FR8|1|A|G|819
8FR8|1|A|A|820
8FR8|1|A|A|821
8FR8|1|A|G|822
*
8FR8|1|A|U|839
8FR8|1|A|G|840
8FR8|1|A|G|841
8FR8|1|A|A|842
8FR8|1|A|G|843

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain K

50S ribosomal protein L2