IL_8FR8_085

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_085 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.168

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8FR8|1|A|U|2068
8FR8|1|A|U|2069
8FR8|1|A|A|2070
8FR8|1|A|A|2071
8FR8|1|A|G|2072
*
8FR8|1|A|U|2111
8FR8|1|A|U|2112
8FR8|1|A|A|2113
8FR8|1|A|A|2114
8FR8|1|A|G|2115

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains