IL_8FR8_088

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_088 not in the Motif Atlas

Geometric match to IL_5J7L_318

Geometric discrepancy: 0.0779

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8FR8|1|A|G|2157
8FR8|1|A|C|2158
*
8FR8|1|A|G|2188
8FR8|1|A|C|2189
8FR8|1|A|A|2190
8FR8|1|A|C|2191

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain E

Transfer RNA; tRNA

Chain b

30S ribosomal protein S22