IL_8FR8_095

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_095 not in the Motif Atlas

Geometric match to IL_4V9F_023

Geometric discrepancy: 0.1798

The information below is about IL_4V9F_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8FR8|1|A|G|2317
8FR8|1|A|U|2318
8FR8|1|A|G|2319
*
8FR8|1|A|C|2416
8FR8|1|A|C|2417
8FR8|1|A|U|2418

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain Q

50S ribosomal protein L9