IL_8FR8_096

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UUUG*CUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_096 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.3906

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

8FR8|1|A|U|2330
8FR8|1|A|U|2331
8FR8|1|A|U|2332
8FR8|1|A|G|2333
*
8FR8|1|A|C|2402
8FR8|1|A|U|2403
8FR8|1|A|G|2404
8FR8|1|A|A|2405

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains