IL_8FR8_101

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAA*UGUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_101 not in the Motif Atlas

Geometric match to IL_7RQB_088

Geometric discrepancy: 0.2453

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8FR8|1|A|C|2521
8FR8|1|A|A|2522
8FR8|1|A|A|2523
*
8FR8|1|A|U|2541
8FR8|1|A|G|2542
8FR8|1|A|U|2543
8FR8|1|A|U|2544
8FR8|1|A|G|2545

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L18

Chain O

50S ribosomal protein L5