IL_8FR8_118

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UAUAC*GAUAG

Length

10 nucleotides

Bulged bases

8FR8|1|A|U|2913, 8FR8|1|A|A|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_118 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1948

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8FR8|1|A|U|2911
8FR8|1|A|A|2912
8FR8|1|A|U|2913
8FR8|1|A|A|2914
8FR8|1|A|C|2915
*
8FR8|1|A|G|2942
8FR8|1|A|A|2943
8FR8|1|A|U|2944
8FR8|1|A|A|2945
8FR8|1|A|G|2946

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L19

Chain J

50S ribosomal protein L17

Chain L

50S ribosomal protein L3