IL_8FR8_130
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- UACC*GUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FR8_130 not in the Motif Atlas
- Geometric match to IL_4ERD_002
- Geometric discrepancy: 0.2171
- The information below is about IL_4ERD_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_10994.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8FR8|1|B|U|81
8FR8|1|B|A|82
8FR8|1|B|C|83
8FR8|1|B|C|84
*
8FR8|1|B|G|92
8FR8|1|B|U|93
8FR8|1|B|G|94
8FR8|1|B|G|95
Current chains
- Chain B
- 5S rRNA (118-MER)
Nearby chains
- Chain 2
- 50S ribosomal protein L25
- Chain 7
- 50S ribosomal protein L30
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
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