IL_8FR8_158
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- CGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FR8_158 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.1396
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.2
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8FR8|1|a|C|560
8FR8|1|a|G|561
8FR8|1|a|U|562
8FR8|1|a|A|563
8FR8|1|a|G|564
*
8FR8|1|a|U|737
8FR8|1|a|G|738
8FR8|1|a|A|739
8FR8|1|a|G|740
8FR8|1|a|G|741
Current chains
- Chain a
- 16S rRNA (1511-MER)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain i
- 30S ribosomal protein S8
- Chain n
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
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