IL_8FR8_169
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FR8_169 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0957
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8FR8|1|a|G|869
8FR8|1|a|G|870
8FR8|1|a|A|871
8FR8|1|a|G|872
8FR8|1|a|U|873
8FR8|1|a|A|874
8FR8|1|a|C|875
8FR8|1|a|G|876
*
8FR8|1|a|U|887
8FR8|1|a|A|888
8FR8|1|a|A|889
8FR8|1|a|A|890
8FR8|1|a|A|891
8FR8|1|a|C|892
Current chains
- Chain a
- 16S rRNA (1511-MER)
Nearby chains
- Chain b
- 30S ribosomal protein S22
- Chain n
- 30S ribosomal protein S12
Coloring options: