IL_8FR8_187

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_187 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1271

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8FR8|1|a|C|1285
8FR8|1|a|G|1286
8FR8|1|a|G|1287
8FR8|1|a|A|1288
8FR8|1|a|U|1289
8FR8|1|a|C|1290
*
8FR8|1|a|G|1311
8FR8|1|a|U|1312
8FR8|1|a|G|1313
8FR8|1|a|A|1314
8FR8|1|a|A|1315
8FR8|1|a|G|1316

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain j

30S ribosomal protein S13