IL_8FRU_001

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_001 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1864

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8FRU|1|1|G|2
8FRU|1|1|C|3
8FRU|1|1|G|4
*
8FRU|1|4|C|137
8FRU|1|4|C|138
8FRU|1|4|U|139

Current chains

Chain 1

28S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain G

60S ribosomal protein eL8