IL_8FRU_002

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8FRU|1|4|U|134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_002 not in the Motif Atlas

Geometric match to IL_5TBW_053

Geometric discrepancy: 0.2323

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8FRU|1|1|C|6
8FRU|1|1|C|7
*
8FRU|1|4|G|133
8FRU|1|4|U|134
8FRU|1|4|G|135

Current chains

Chain 1

28S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain G

60S ribosomal protein eL8

Chain N

60S ribosomal protein eL15

Chain X

60S ribosomal protein uL23