IL_8FRU_004
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGAACUU*AUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- 8FRU|1|1|G|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_004 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.2924
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8FRU|1|1|G|30
8FRU|1|1|G|31
8FRU|1|1|A|32
8FRU|1|1|A|33
8FRU|1|1|C|34
8FRU|1|1|U|35
8FRU|1|1|U|36
*
8FRU|1|1|A|43
8FRU|1|1|U|44
8FRU|1|1|C|45
8FRU|1|1|A|46
8FRU|1|1|G|47
8FRU|1|1|U|48
8FRU|1|1|A|49
8FRU|1|1|C|50
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein eL13
- Chain N
- 60S ribosomal protein eL15
- Chain a
- 60S ribosomal protein uL15
- Chain j
- 60S ribosomal protein eL37
- Chain o
- 60S ribosomal protein eL42
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