IL_8FRU_007

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AG*CGCUGU

Length

8 nucleotides

Bulged bases

8FRU|1|1|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1319

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8FRU|1|1|A|117
8FRU|1|1|G|118
*
8FRU|1|1|C|122
8FRU|1|1|G|123
8FRU|1|1|C|124
8FRU|1|1|U|125
8FRU|1|1|G|126
8FRU|1|1|U|127

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 4

5.8S rRNA

Chain G

60S ribosomal protein eL8

Chain N

60S ribosomal protein eL15