IL_8FRU_010
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGACG*CCGCUCAAAAGAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_010 not in the Motif Atlas
- Geometric match to IL_4V9F_014
- Geometric discrepancy: 0.3174
- The information below is about IL_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31504.1
- Basepair signature
- cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8FRU|1|1|G|326
8FRU|1|1|G|327
8FRU|1|1|A|328
8FRU|1|1|C|329
8FRU|1|1|G|330
*
8FRU|1|1|C|339
8FRU|1|1|C|340
8FRU|1|1|G|341
8FRU|1|1|C|342
8FRU|1|1|U|343
8FRU|1|1|C|344
8FRU|1|1|A|345
8FRU|1|1|A|346
8FRU|1|1|A|347
8FRU|1|1|A|348
8FRU|1|1|G|349
8FRU|1|1|A|350
8FRU|1|1|C|351
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S rRNA
- Chain P
- 60S ribosomal protein uL22
- Chain Y
- 60S ribosomal protein uL24
Coloring options: