IL_8FRU_011
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUGAACC*GCGGAUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_011 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.1071
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FRU|1|1|C|352
8FRU|1|1|U|353
8FRU|1|1|G|354
8FRU|1|1|A|355
8FRU|1|1|A|356
8FRU|1|1|C|357
8FRU|1|1|C|358
*
8FRU|1|4|G|13
8FRU|1|4|C|14
8FRU|1|4|G|15
8FRU|1|4|G|16
8FRU|1|4|A|17
8FRU|1|4|U|18
8FRU|1|4|G|19
Current chains
- Chain 1
- 28S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein uL4
- Chain P
- 60S ribosomal protein uL22
- Chain e
- 60S ribosomal protein eL32
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