IL_8FRU_012

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_012 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.1764

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8FRU|1|1|C|362
8FRU|1|1|C|363
8FRU|1|1|G|364
*
8FRU|1|4|C|7
8FRU|1|4|C|8
8FRU|1|4|G|9

Current chains

Chain 1

28S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain P

60S ribosomal protein uL22

Chain e

60S ribosomal protein eL32