IL_8FRU_017

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

8FRU|1|1|G|575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_017 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.125

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8FRU|1|1|G|548
8FRU|1|1|C|549
*
8FRU|1|1|G|574
8FRU|1|1|G|575
8FRU|1|1|C|576

Current chains

Chain 1

28S rRNA

Nearby chains

Chain A

60S ribosomal protein uL2

Chain R

60S ribosomal protein eL19

Chain p

60S ribosomal protein eL43