IL_8FRU_019

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_019 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.068

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8FRU|1|1|G|584
8FRU|1|1|G|585
8FRU|1|1|U|586
8FRU|1|1|G|587
*
8FRU|1|1|C|603
8FRU|1|1|U|604
8FRU|1|1|C|605

Current chains

Chain 1

28S rRNA

Nearby chains

Chain j

60S ribosomal protein eL37