IL_8FRU_032
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCAGG*CCGCG
- Length
- 10 nucleotides
- Bulged bases
- 8FRU|1|1|C|1029
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_032 not in the Motif Atlas
- Geometric match to IL_4V9F_094
- Geometric discrepancy: 0.2878
- The information below is about IL_4V9F_094
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_45790.2
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
8FRU|1|1|C|875
8FRU|1|1|C|876
8FRU|1|1|A|877
8FRU|1|1|G|878
8FRU|1|1|G|879
*
8FRU|1|1|C|1026
8FRU|1|1|C|1027
8FRU|1|1|G|1028
8FRU|1|1|C|1029
8FRU|1|1|G|1030
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein uL30
- Chain Q
- 60S ribosomal protein eL18
- Chain e
- 60S ribosomal protein eL32
- Chain f
- 60S ribosomal protein eL33
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