IL_8FRU_035

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8FRU|1|1|C|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_035 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.1946

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8FRU|1|1|G|905
8FRU|1|1|C|906
8FRU|1|1|G|907
*
8FRU|1|1|C|994
8FRU|1|1|C|995

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain H

60S ribosomal protein uL6

Chain S

60S ribosomal protein eL20

Chain m

60S ribosomal protein eL40