IL_8FRU_038

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCCGG*CG

Length

7 nucleotides

Bulged bases

8FRU|1|1|C|1071

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_038 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.5711

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8FRU|1|1|C|1070
8FRU|1|1|C|1071
8FRU|1|1|C|1072
8FRU|1|1|G|1073
8FRU|1|1|G|1074
*
8FRU|1|1|C|1106
8FRU|1|1|G|1107

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 4

5.8S rRNA

Chain C

60S ribosomal protein uL4

Chain e

60S ribosomal protein eL32