IL_8FRU_039
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGGCGAAG*CGGAC
- Length
- 13 nucleotides
- Bulged bases
- 8FRU|1|1|C|1078
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_039 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1891
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8FRU|1|1|G|1075
8FRU|1|1|G|1076
8FRU|1|1|G|1077
8FRU|1|1|C|1078
8FRU|1|1|G|1079
8FRU|1|1|A|1080
8FRU|1|1|A|1081
8FRU|1|1|G|1082
*
8FRU|1|1|C|1101
8FRU|1|1|G|1102
8FRU|1|1|G|1103
8FRU|1|1|A|1104
8FRU|1|1|C|1105
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S rRNA
- Chain C
- 60S ribosomal protein uL4
- Chain Y
- 60S ribosomal protein uL24
- Chain e
- 60S ribosomal protein eL32
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