IL_8FRU_049

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGCAG*CCCGG

Length

10 nucleotides

Bulged bases

8FRU|1|1|G|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_049 not in the Motif Atlas

Geometric match to IL_6JXM_002

Geometric discrepancy: 0.3307

The information below is about IL_6JXM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14445.1

Basepair signature

cWW-L-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8FRU|1|1|C|1367
8FRU|1|1|G|1368
8FRU|1|1|C|1369
8FRU|1|1|A|1370
8FRU|1|1|G|1371
*
8FRU|1|1|C|1401
8FRU|1|1|C|1402
8FRU|1|1|C|1403
8FRU|1|1|G|1404
8FRU|1|1|G|1405

Current chains

Chain 1

28S rRNA

Nearby chains

Chain g

60S ribosomal protein eL34