IL_8FRU_053

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_053 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.0993

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8FRU|1|1|G|1528
8FRU|1|1|G|1529
8FRU|1|1|A|1530
8FRU|1|1|A|1531
*
8FRU|1|1|U|1822
8FRU|1|1|C|1823

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain V

60S ribosomal protein uL14