IL_8FRU_055

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGUAAC*GGAAAAG

Length

13 nucleotides

Bulged bases

8FRU|1|1|A|1561

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_055 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1056

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8FRU|1|1|C|1548
8FRU|1|1|G|1549
8FRU|1|1|U|1550
8FRU|1|1|A|1551
8FRU|1|1|A|1552
8FRU|1|1|C|1553
*
8FRU|1|1|G|1558
8FRU|1|1|G|1559
8FRU|1|1|A|1560
8FRU|1|1|A|1561
8FRU|1|1|A|1562
8FRU|1|1|A|1563
8FRU|1|1|G|1564

Current chains

Chain 1

28S rRNA

Nearby chains

Chain n

60S ribosomal protein eL41

Chain p

60S ribosomal protein eL43