IL_8FRU_060

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8FRU|1|1|C|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_060 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.0826

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8FRU|1|1|C|1682
8FRU|1|1|C|1683
8FRU|1|1|A|1684
8FRU|1|1|G|1685
*
8FRU|1|1|C|1731
8FRU|1|1|G|1732

Current chains

Chain 1

28S rRNA

Nearby chains

Chain A

60S ribosomal protein uL2