IL_8FRU_062

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

8FRU|1|1|C|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_062 not in the Motif Atlas

Geometric match to IL_7KGA_004

Geometric discrepancy: 0.2457

The information below is about IL_7KGA_004

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8FRU|1|1|A|1690
8FRU|1|1|C|1691
8FRU|1|1|G|1692
*
8FRU|1|1|C|1723
8FRU|1|1|U|1724

Current chains

Chain 1

28S rRNA

Nearby chains

Chain A

60S ribosomal protein uL2