IL_8FRU_069

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCA*UACC

Length

7 nucleotides

Bulged bases

8FRU|1|1|C|1883, 8FRU|1|1|C|2403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_069 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1325

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8FRU|1|1|G|1882
8FRU|1|1|C|1883
8FRU|1|1|A|1884
*
8FRU|1|1|U|2401
8FRU|1|1|A|2402
8FRU|1|1|C|2403
8FRU|1|1|C|2404

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain P

60S ribosomal protein uL22