IL_8FRU_070

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUUU*ACA

Length

7 nucleotides

Bulged bases

8FRU|1|1|U|1896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_070 not in the Motif Atlas

Geometric match to IL_4ZC7_001

Geometric discrepancy: 0.1729

The information below is about IL_4ZC7_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8FRU|1|1|U|1894
8FRU|1|1|U|1895
8FRU|1|1|U|1896
8FRU|1|1|U|1897
*
8FRU|1|1|A|2232
8FRU|1|1|C|2233
8FRU|1|1|A|2234

Current chains

Chain 1

28S rRNA

Nearby chains

Chain C

60S ribosomal protein uL4

Chain a

60S ribosomal protein uL15

Chain b

60S ribosomal protein eL29