IL_8FRU_071

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8FRU|1|1|A|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_071 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0919

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8FRU|1|1|G|1898
8FRU|1|1|A|1899
*
8FRU|1|1|U|2228
8FRU|1|1|A|2229
8FRU|1|1|C|2230
8FRU|1|1|C|2231

Current chains

Chain 1

28S rRNA

Nearby chains

Chain A

60S ribosomal protein uL2

Chain N

60S ribosomal protein eL15