IL_8FRU_072

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

8FRU|1|1|G|2028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_072 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.2303

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8FRU|1|1|C|1909
8FRU|1|1|A|1910
8FRU|1|1|G|1911
*
8FRU|1|1|C|2026
8FRU|1|1|G|2027
8FRU|1|1|G|2028
8FRU|1|1|G|2029

Current chains

Chain 1

28S rRNA

Nearby chains

Chain A

60S ribosomal protein uL2

Chain N

60S ribosomal protein eL15

Chain o

60S ribosomal protein eL42