IL_8FRU_076

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_076 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1231

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8FRU|1|1|G|2090
8FRU|1|1|C|2091
8FRU|1|1|G|2092
*
8FRU|1|1|C|2106
8FRU|1|1|C|2107
8FRU|1|1|C|2108

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain D

60S ribosomal protein uL18

Chain J

60S ribosomal protein uL5