IL_8FRU_081

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_081 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.2489

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8FRU|1|1|G|2249
8FRU|1|1|U|2250
8FRU|1|1|G|2251
*
8FRU|1|1|U|2279
8FRU|1|1|U|2280
8FRU|1|1|U|2281
8FRU|1|1|U|2282
8FRU|1|1|U|2283

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain I

60S ribosomal protein uL16