IL_8FRU_082

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCGAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_082 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1364

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8FRU|1|1|C|2256
8FRU|1|1|C|2257
8FRU|1|1|G|2258
8FRU|1|1|A|2259
8FRU|1|1|G|2260
*
8FRU|1|1|C|2270
8FRU|1|1|G|2271
8FRU|1|1|A|2272
8FRU|1|1|C|2273
8FRU|1|1|G|2274

Current chains

Chain 1

28S rRNA

Nearby chains

Chain I

60S ribosomal protein uL16

Chain m

60S ribosomal protein eL40