IL_8FRU_085

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CU*AUCG

Length

6 nucleotides

Bulged bases

8FRU|1|1|U|2361, 8FRU|1|1|C|2362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_085 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.0821

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

8FRU|1|1|C|2302
8FRU|1|1|U|2303
*
8FRU|1|1|A|2360
8FRU|1|1|U|2361
8FRU|1|1|C|2362
8FRU|1|1|G|2363

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain O

60S ribosomal protein uL13

Chain V

60S ribosomal protein uL14