IL_8FRU_095
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCCCUG*CGCACC
- Length
- 12 nucleotides
- Bulged bases
- 8FRU|1|1|A|2544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_095 not in the Motif Atlas
- Geometric match to IL_7RQB_107
- Geometric discrepancy: 0.2418
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8FRU|1|1|G|2516
8FRU|1|1|C|2517
8FRU|1|1|C|2518
8FRU|1|1|C|2519
8FRU|1|1|U|2520
8FRU|1|1|G|2521
*
8FRU|1|1|C|2541
8FRU|1|1|G|2542
8FRU|1|1|C|2543
8FRU|1|1|A|2544
8FRU|1|1|C|2545
8FRU|1|1|C|2546
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein uL6
- Chain O
- 60S ribosomal protein uL13
- Chain m
- 60S ribosomal protein eL40
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