IL_8FRU_107

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8FRU|1|3|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_107 not in the Motif Atlas

Homologous match to IL_4V9F_107

Geometric discrepancy: 0.2003

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

8FRU|1|3|A|83
8FRU|1|3|U|84
8FRU|1|3|C|85
*
8FRU|1|3|G|92
8FRU|1|3|U|93

Current chains

Chain 3

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain F

60S ribosomal protein uL30

Chain I

60S ribosomal protein uL16

Chain S

60S ribosomal protein eL20