IL_8FTO_187

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FTO_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0478

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FTO|1|a|U|1851
8FTO|1|a|U|1852
8FTO|1|a|A|1853
8FTO|1|a|A|1854
8FTO|1|a|U|1855
8FTO|1|a|U|1856
8FTO|1|a|G|1857
8FTO|1|a|A|1858
8FTO|1|a|U|1859
8FTO|1|a|G|1860
*
8FTO|1|a|U|1882
8FTO|1|a|U|1883
8FTO|1|a|G|1884
8FTO|1|a|A|1885
8FTO|1|a|U|1886
8FTO|1|a|C|1887
8FTO|1|a|G|1888
8FTO|1|a|A|1889
8FTO|1|a|A|1890
8FTO|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains