3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZD_019 not in the Motif Atlas
Geometric match to IL_5J7L_263
Geometric discrepancy: 0.1045
The information below is about IL_5J7L_263
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

8FZD|1|A|U|703
8FZD|1|A|G|704
8FZD|1|A|A|705
8FZD|1|A|A|706
8FZD|1|A|G|707
*
8FZD|1|A|U|724
8FZD|1|A|G|725
8FZD|1|A|G|726
8FZD|1|A|A|727
8FZD|1|A|G|728

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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