IL_8FZD_021

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8FZD|1|A|G|776, 8FZD|1|A|A|788, 8FZD|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZD_021 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.094

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8FZD|1|A|G|775
8FZD|1|A|G|776
8FZD|1|A|G|777
*
8FZD|1|A|C|787
8FZD|1|A|A|788
8FZD|1|A|A|789
8FZD|1|A|U|790
8FZD|1|A|C|791

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain U

50S ribosomal protein L22