IL_8FZD_039
3D structure
- PDB id
- 8FZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 8FZD|1|A|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZD_039 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.1597
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8FZD|1|A|C|1043
8FZD|1|A|C|1044
8FZD|1|A|C|1045
8FZD|1|A|A|1046
8FZD|1|A|G|1047
8FZD|1|A|A|1048
8FZD|1|A|C|1049
8FZD|1|A|A|1050
8FZD|1|A|G|1051
*
8FZD|1|A|U|1108
8FZD|1|A|C|1109
8FZD|1|A|G|1110
8FZD|1|A|A|1111
8FZD|1|A|G|1112
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain I
- 50S ribosomal protein L10
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