3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCAAC*GGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZD_046 not in the Motif Atlas
Homologous match to IL_5J7L_291
Geometric discrepancy: 0.1906
The information below is about IL_5J7L_291
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

8FZD|1|A|C|1319
8FZD|1|A|C|1320
8FZD|1|A|A|1321
8FZD|1|A|A|1322
8FZD|1|A|C|1323
*
8FZD|1|A|G|1331
8FZD|1|A|G|1332
8FZD|1|A|G|1333

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain U
50S ribosomal protein L22

Coloring options:


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